rs27260432 SNP Detail

Summary

• ID
  rs27260432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167448733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTGCAA AAGCCAGATC
  CTGTGGGCTC ATGCTGGGGT CACGTGAGGT CACACCCTCA AAGGAGGATG TACTGTCTGC
  AAGCTCTGCT GAGTGGAGAC CCCAGCCTGG AGCCCCAAGT GACCTGGCAG TGAACTAACA
  AGCCCAGGCC AGCACCAAGC ACCTGGGGTC TGGCAGGGCC TTCTGGAGGG CAGCCTGTTG
  Y
  GCCATGTGCC AGAGGGAATG TCTGCCCCAG CTGTAGGCTG GCCTGTGTAT CTCCAGGATG
  AAGCTCAACT CCTGAGTCAA GACATTCAGA CCTGCTCTCA CCCCTTGTAT GGTAGACAGC
  TGCCACTCTA TCAGATCGAA ATTCTTGTTT GCAACATCAC AGCTATGACA CATCCGTCCA
  ATTTTAGCAT AGAGTCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507554	NES08845491	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260432					SNP	C	C	C	C	C	T	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507554	NES08845491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167448733 () rs orientation: forward

Symbol	Name	Function Class
Gm11476	predicted gene 11476	within coordinates
Gm20431	predicted gene 20431	1037 bp downstream
Rr397511	regulatory region 397511	1262 bp downstream
Rr570659	regulatory region 570659	1087 bp distal
Rr570660	regulatory region 570660	1415 bp distal
Rr570661	regulatory region 570661	942 bp distal
Ube2v1	ubiquitin-conjugating enzyme E2 variant 1	826 bp downstream