rs27260515 SNP Detail

Summary

• ID
  rs27260515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167370033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATGTAG CAGGCCAGGG
  TACAGCTACC ACCTGAGCAG TTGCTTGCTT TGTTCGCCGG TGCAACACAG GGCAGCATCC
  CAGCAGTGTC CTTGTGGAGA TGGAGTGGAT GGTCAGCTGT GAATTTTGTT TAATTTTATT
  AGTTTGAATT TTTTTATACG TATAAGTATT TTCCCTGCAT GTATGACTGT ATACCCTGTA
  Y
  GTACAATGCC AGTTTTTTGT TTGTTTGTTT GGTTTGTTTT TTTTTTGAGA CACGTAACCC
  AGGTTGGCTT GGACCTCATG ACCCTCATAG AATTCTTTCT TGGAAGTTAA CACTAATTGG
  GCTACCTGGT AATTAGGGCT TTGAATTCAG ATAATCCTTA AACCCACTGC AGGGATGTCT
  GTAAGAGGCG TTCTTAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507637	NES08847229	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260515					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507637	NES08847229	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167370033 () rs orientation: forward

Symbol	Name	Function Class
Rr374231	regulatory region 374231	1283 bp upstream
Rr570623	regulatory region 570623	265 bp proximal