rs27260520 SNP Detail

Summary

• ID
  rs27260520
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167369251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCATATA TATATGTAAT
  TGTGAAATAA TACATTTTTT CAAAAGGAGC CCAGAGCGTG GATTACAGAT GGCTATATGC
  TGCCAGATAT GATTGCTGGG GAAGAACTCT GGCCTTTCAT TTCTCCACAC ACCCCCACCT
  TTGAGACAGG TGGAGTTCTG GCTGTATTGC ACAGGCTGGC CCCAAAAACC ATTTCATAAA
  W
  TTTTCCCTCA CAGTTGCCTT ATGGGGAGGA GGAGTTTGGG GATTGATCTC AGGGATGCTT
  AAACCCTCGT ACGTATGTCC CACATCCCTC TCTGGACCAG TCCCTTGCCC TCTGTGTGGT
  TCAGAGATCT AGAAAATGGG AAGCCTAGGG CCTGTGGGGA GGAAAGAAAT CCCCAAAAGA
  TTAAACCTGC TGTCAGGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37507642	NES08847289	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27260520					SNP	T	T	T	T	T	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507642	NES08847289	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167369251 () rs orientation: forward

Symbol	Name	Function Class
Rr570623	regulatory region 570623	1047 bp proximal