rs27260622 SNP Detail

Summary

• ID
  rs27260622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130268225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGATTGC CAGTTCAGCC
  TTAGATGGAT ATATATCAGA GGCCAGCCTT GGCAAGATGA GACTCTGTCC CCAAATACAT
  ATTTAAAAGG CTAAAAAATA ATAAATATAA AATATTAGCT ATTGTAAAAA TACCTGTTGC
  TTACCCAGAC TTTTAAAATC AGAGCATAAG GAAGATGACC ACATTACGAC AGAGCTCCTC
  Y
  TGTTTACTCT ATGGAGAGTC AGCTTCATGG GTAGATAGGT AATGCTTCAG AAGATGTGAG
  TGAGTCACAG AAGTGCTGGA CTCAAGAAGG GCCTAGAAGT GTTACACCTC CTGGGACTGA
  TATGTATGTC CTAAGTTGCT AACAAAAATG ACTTCCTTAT ATACTGGATA TTATGCTAAG
  TACTTATGTA TAGTTTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37471746	NES08982529	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	C	T	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27260622					SNP	T	T	T	C	T	T	C	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37471746	NES08982529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130268225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12264	CpG island 12264	1380 bp distal
Pced1a	PC-esterase domain containing 1A	1533 bp upstream
Rr565056	regulatory region 565056	1930 bp distal
Rr565057	regulatory region 565057	1128 bp distal
Tssr20210	transcription start site region 20210	1912 bp downstream
Tssr26296	transcription start site region 26296	1999 bp upstream
Tssr26297	transcription start site region 26297	1577 bp upstream
Tssr26298	transcription start site region 26298	1515 bp upstream
Vps16	VSP16 CORVET/HOPS core subunit	within coordinates