rs27260623 SNP Detail

Summary

• ID
  rs27260623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130267879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTACAA AGCGAGTTCC
  AGGACAGCCA GGGCTATACA GAGAAACCCT GTCTCGAAAA AACAAACCAA AAAAACCAAA
  ACAAAACAAA ACAAAAAAAC CCAGAAGACT TTGCTTCTGC TCATAGCCAA ACTTTTAAAT
  GGAATTGTGT TGTTTGCAAT GTAATGCATT TTCTAGACAG AGGATGCCTT GTGGTAATTT
  Y
  TAGAGCTCTG TTACATTTGT TTAGTCATGA TTTCTCTTAG ACACATGTAC AATATGAAGC
  AACTGAAAAT ACTAATGAGC AGAGTGTGGT GTCCCATCCA CAACCTCATA TAACACATAG
  CCCTTGGCAT GTGGAGGCTG GAAGACTAGG ATTGCCAGTT CAGCCTTAGA TGGATATATA
  TCAGAGGCCA GCCTTGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37471748	NES08982567	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27260623					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37471748	NES08982567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130267879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12264	CpG island 12264	1034 bp distal
Pced1a	PC-esterase domain containing 1A	1187 bp upstream
Rr565055	regulatory region 565055	1830 bp distal
Rr565056	regulatory region 565056	1584 bp distal
Rr565057	regulatory region 565057	782 bp distal
Tssr20210	transcription start site region 20210	1566 bp downstream
Tssr26295	transcription start site region 26295	1666 bp upstream
Tssr26296	transcription start site region 26296	1653 bp upstream
Tssr26297	transcription start site region 26297	1231 bp upstream
Tssr26298	transcription start site region 26298	1169 bp upstream
Vps16	VSP16 CORVET/HOPS core subunit	within coordinates