rs27260624 SNP Detail

Summary

• ID
  rs27260624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130267251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTATCACC CTGAAGAATG TTGCTCATCT TTCAGGACCT
  GCTTGGTTTT CCTACAGTAG AATCCTTTTA TGCCTCACAA AGGTCCAGTT GTAGAGTCTT
  R
  TCATATGTGG CACACGAGGG CAGTGTTGGT ATGAGTTTCT CGTGCTAAGC TCTTGAAGGC
  TAAGAATACT TCTATTTCCC ATGCATATTT AGGCTAGTGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37471749	NES08982577	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27260624					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37471749	NES08982577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130267251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12264	CpG island 12264	406 bp distal
Pced1a	PC-esterase domain containing 1A	559 bp upstream
Rr565055	regulatory region 565055	1202 bp distal
Rr565056	regulatory region 565056	956 bp distal
Rr565057	regulatory region 565057	154 bp distal
Tssr20210	transcription start site region 20210	938 bp downstream
Tssr26294	transcription start site region 26294	1519 bp upstream
Tssr26295	transcription start site region 26295	1038 bp upstream
Tssr26296	transcription start site region 26296	1025 bp upstream
Tssr26297	transcription start site region 26297	603 bp upstream
Tssr26298	transcription start site region 26298	541 bp upstream
Vps16	VSP16 CORVET/HOPS core subunit	within coordinates