rs27260625 SNP Detail

Summary

• ID
  rs27260625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130266628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG TTGGCCTCCG GAAGGATGCT
  Y
  AGATCACGTA GAGGGAGGCC GCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37471750	NES08982677	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	T	C	C		C	C	C	C
ss147596158	ENSMUSSNP4219846	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320507191	CHEV_2_130250444	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27260625					SNP	C	C	T	C	C	C	C	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37471750	NES08982677	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130266628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12264	CpG island 12264	within coordinates
Pced1a	PC-esterase domain containing 1A	within coordinates
Tssr20210	transcription start site region 20210	315 bp downstream
Tssr26294	transcription start site region 26294	896 bp upstream
Tssr26295	transcription start site region 26295	415 bp upstream
Tssr26296	transcription start site region 26296	402 bp upstream
Tssr26297	transcription start site region 26297	within coordinates
Tssr26298	transcription start site region 26298	34 bp downstream
Vps16	VSP16 CORVET/HOPS core subunit	within coordinates