rs27260626 SNP Detail

Summary

• ID
  rs27260626
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130266308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTGTGGA GGACAGAAAC
  CAGGGCTAGG TCCACTCGGG CCGCCGCGCC GAGGGCAGGA CGATAGCTCA GCGTAGCTTG
  CCCACAGTTC TGATGGCCGC TAAGGCGGCC TCGTCACGTG ACCCCGAAGG GCGGAAGCGG
  AAGTGCGGCC TGAGCTTGCG CTAGGCGGGT TTTTCCTCGG CGACTCTTGC CGCCAGCTGT
  W
  CTAGACATGG ACTGTTACAC TGCGAACTGG AATCCACTCG GGGACTCTGC CTTTTACAGG
  TGAGCTGCCC GACGCCCCAC CTTCCGTCCC ACAGCCCAGC TTACCTTGCT TGTCTGCTGC
  TGGCTTGAGC CTCCCGGCAG AGCCAGCAAT GCTCGCCCCG GCCACTACGC GTGCTGGCGT
  CCGTCCCTAT GGCGGCTCGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37471751	NES08982676	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27260626					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37471751	NES08982676	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130266308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12264	CpG island 12264	within coordinates
Pced1a	PC-esterase domain containing 1A	within coordinates
Rr565055	regulatory region 565055	259 bp distal
Rr565056	regulatory region 565056	13 bp distal
Rr565057	regulatory region 565057	289 bp proximal
Tssr20210	transcription start site region 20210	within coordinates
Tssr26294	transcription start site region 26294	576 bp upstream
Tssr26295	transcription start site region 26295	95 bp upstream
Tssr26296	transcription start site region 26296	82 bp upstream
Tssr26297	transcription start site region 26297	285 bp downstream
Tssr26298	transcription start site region 26298	354 bp downstream
Vps16	VSP16 CORVET/HOPS core subunit	within coordinates