rs27260630 SNP Detail

Summary

• ID
  rs27260630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130266041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA GATGCTCATG GCTCCCACTT
  Y
  CGGTCACCCG TGTCCCGCCC TATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37471755	NES08982672	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	T	C		C	C	C	C
ss320507190	CHEV_2_130249857	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27260630					SNP	C	T	C	C	C	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37471755	NES08982672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130266041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12264	CpG island 12264	within coordinates
Pced1a	PC-esterase domain containing 1A	within coordinates
Rr565055	regulatory region 565055	within coordinates
Rr565056	regulatory region 565056	147 bp proximal
Rr565057	regulatory region 565057	556 bp proximal
Tssr20210	transcription start site region 20210	200 bp upstream
Tssr26294	transcription start site region 26294	309 bp upstream
Tssr26295	transcription start site region 26295	121 bp downstream
Tssr26296	transcription start site region 26296	175 bp downstream
Tssr26297	transcription start site region 26297	552 bp downstream
Tssr26298	transcription start site region 26298	621 bp downstream
Vps16	VSP16 CORVET/HOPS core subunit	218 bp upstream