rs27260632 SNP Detail

Summary

• ID
  rs27260632
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:130264900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACACTGG CATGGCTGCC
  AAGCTTCTCT CACCTTGGCT TTTAACTGGG AAGCTGTGAG CAGTGTGTCT TTCTGGAGCA
  GAAGCACCAG GTCCTTATAC ACAGCTCTTT GGACTGCAGG GAGACAGGGA TCCCAAGGTT
  AAGGTCGGCC TCACCCCCTC CCAGAGTTTC CCAAATGAAG GCCTTTGTTT TCCAGGGATT
  R
  ACTCTCCAAC AGCAGCTCTA TGGAGGGTTG GCTTAGAGAA GAAAAGACGA GATTTTAAAG
  CCCTAGCTCT GCTCTTTCCA GCTATTTCCC TCTCCTCTAG CTTATGTACA GCGACCAAAG
  ACCAAATGGC AAAATTAAGT TGGTCCCATC CCTAGGAAAA CACACAACAT AGCCCACAGG
  TCCTTTTAAG AAAATCATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37471757	NES08982670	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27260632					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37471757	NES08982670	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130264900 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12264	CpG island 12264			428 bp proximal
Pced1a	PC-esterase domain containing 1A			Intron
				Noncoding-Transcript-Variant
Rr565055	regulatory region 565055			1128 bp proximal
Rr565056	regulatory region 565056			1288 bp proximal
Rr565057	regulatory region 565057			1697 bp proximal
Tssr20210	transcription start site region 20210			1341 bp upstream
Tssr26294	transcription start site region 26294			768 bp downstream
Tssr26295	transcription start site region 26295			1262 bp downstream
Tssr26296	transcription start site region 26296			1316 bp downstream
Tssr26297	transcription start site region 26297			1693 bp downstream
Tssr26298	transcription start site region 26298			1762 bp downstream
Vps16	VSP16 CORVET/HOPS core subunit			1359 bp upstream