rs27260820 SNP Detail

Summary

• ID
  rs27260820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130205718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGGAGC TTTGGTTTTA
  CCTGCAGGTC CCTCCCCTCT GCCTCCCCTC TTTTTCAGTA CCTGACCTAA CATGACTAGT
  CCCCTGCCTA ATTTTCCTTA TGAGGGTGCT GTTCTTACAG GCTATGAACC CAGCCTGGCA
  CTTACTTTGA CCTTGAATTT ACTTGTGAAA TCCACGGTTC CTCTAAGCCA GAGTCCACAC
  R
  GGCTATAGCC TTCTTGTGTC CCTACCAAAG CAAATCTCTC CTGGGCTTAG CCCAGGATCA
  GGTCCCATTG TTCCACATTC CTTCAGTTCT GAGACAATCG ACCTCACAGC GTTTTTCTAG
  GATTCCCTTG TGTTTGCATG GCTCGCCTTT TCCTGGAGAC ACAACAGTAC TGGGCAGCAG
  TGACAGCTGT CCCAGTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37471951	NES08982328	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260820					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37471951	NES08982328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130205718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12261	CpG island 12261	1212 bp distal
Cpgi12262	CpG island 12262	1516 bp proximal
Ebf4	early B cell factor 4	within coordinates
Rr565046	regulatory region 565046	967 bp distal