rs27260821 SNP Detail

Summary

• ID
  rs27260821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130205696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAAGTAG TGGCATCTGC
  CCTTGGAGGA GCTTTGGTTT TACCTGCAGG TCCCTCCCCT CTGCCTCCCC TCTTTTTCAG
  TACCTGACCT AACATGACTA GTCCCCTGCC TAATTTTCCT TATGAGGGTG CTGTTCTTAC
  AGGCTATGAA CCCAGCCTGG CACTTACTTT GACCTTGAAT TTACTTGTGA AATCCACGGT
  Y
  CCTCTAAGCC AGAGTCCACA CGGGCTATAG CCTTCTTGTG TCCCTACCAA AGCAAATCTC
  TCCTGGGCTT AGCCCAGGAT CAGGTCCCAT TGTTCCACAT TCCTTCAGTT CTGAGACAAT
  CGACCTCACA GCGTTTTTCT AGGATTCCCT TGTGTTTGCA TGGCTCGCCT TTTCCTGGAG
  ACACAACAGT ACTGGGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37471952	NES08982327	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260821					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37471952	NES08982327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130205696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12261	CpG island 12261	1190 bp distal
Cpgi12262	CpG island 12262	1538 bp proximal
Ebf4	early B cell factor 4	within coordinates