rs27261835 SNP Detail

Summary

• ID
  rs27261835
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148731963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCTCTCC CACTGTGTCC
  AAACTGAAAA AAATCTTTTT CTGCTTTCCA TTATTAATTT CACTTCCAAG AATAAGAAAC
  AAGAAACACA TTTGACCAGA TGATGTATAG TGGGAATAGA GATTGTATCT GACAGAGTGT
  ATTAAAACAA AACATTCAAG CCGCATCTGA AAACACTCCC TGGCTCATTG GAGAAGACTC
  R
  GGAGACTTTC GAAAGCTGCT TAAGCATTCT GAATTCTTAA CACTTGGTCA GACTGAGTCC
  TAATTAACTG GCCAGGATGA ATGAAAGCTT TGTCTCTTTC TGAATCTTAA TTTTTCCTCT
  GAGGAACAAG AGAGGGTAGA ATAAAGGACA TCACTGTCAG CCAGCTCTCT TGTATTAAGA
  AGGGGCAGCA ATCCCAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37489755	NES08920252	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27261835					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489755	NES08920252	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148731963 () rs orientation: forward

Symbol	Name	Function Class
Gm38221	predicted gene, 38221	within coordinates
Rr374042	regulatory region 374042	425 bp downstream
Rr566981	regulatory region 566981	within coordinates