rs27261847 SNP Detail

Summary

• ID
  rs27261847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148730972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGACCCA AAACCAGATG
  CTGAAGAAAT CTAATTCCTT TTTATCCTGT GGCTGTGAGA AACAATGAGG AAATGATTCA
  AGGTAGAGAA ACGTAACAAG AAAAGGAAAG AGGTAGGAGG TAGGCAGAAG ATGAGGTTGG
  GGAATCAATA CATTTGGTAC AGTCTACTAG TTCTCAAATT GTGGTCCAGG TCCTGTTATG
  Y
  TTCCTCTTTT GGTCCTTAAA CAGTCCCAAG GTAGAGGGTT GGGTGACATA GGTGTGGAAG
  CAGAGAGCTC TTCTCTAAAC AGTTCAGACA GAAAAAGGAA GCAAATGGAT TCTGTTCCTT
  TTTTGTGGAA ATGGGAAGTG CGCCAGGACA AACACAATGC CTTTTGGAGG ATCAAGGGCC
  TAGGTAAGGA ACCCAGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37489767	NES08920240	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27261847					SNP	T	T	T	T	T	C	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489767	NES08920240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148730972 () rs orientation: forward

Symbol	Name	Function Class
Gm38221	predicted gene, 38221	872 bp downstream
Rr374042	regulatory region 374042	within coordinates
Rr566981	regulatory region 566981	141 bp proximal