rs27261851 SNP Detail

Summary

• ID
  rs27261851
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148730685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATCACCC CTGCACAAAA
  ACTCAAGTGG ATCAAGGACC TCATTATAAA GCTGAATACA GTTAATCTCA TAGAAGAACA
  AGTGAGAAAT AGCCTTGAAT GCATTGGTAC AGGAGACATT TTCCCAGTGA ACCTGACCTA
  TGACTTTCAA GGCAAAAGTC TTCATACTCA TTCCCTGATT GATCTGACTC ATGTGCTCTG
  S
  GCTGAATGAA CTTCAAGGGC CTGTAGGGGT GTGTGGCTAA AAGTTCTTTG GCAAGAAGGG
  TTATCCCACA TGAATGAAGG TCTTTCCTAA GACCCAAAAC CAGATGCTGA AGAAATCTAA
  TTCCTTTTTA TCCTGTGGCT GTGAGAAACA ATGAGGAAAT GATTCAAGGT AGAGAAACGT
  AACAAGAAAA GGAAAGAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37489771	NES08920232	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27261851					SNP	G	G	G	G	G	G	G	G	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489771	NES08920232	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148730685 () rs orientation: forward

Symbol	Name	Function Class
Gm38221	predicted gene, 38221	1159 bp downstream
Rr374042	regulatory region 374042	19 bp upstream