rs27261855 SNP Detail

Summary

• ID
  rs27261855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148728776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAGTCTT GTAGAGGGTA
  AACTGAAAAG TTAGAAGGCT CTAGGCAAAC GACAGTAAGG ACAGGGATGT AGAAGAATAG
  GAGTCCCAGA GGAAGCACCA ATCATTTCCA GTTGTGGAGA AGTGACTATT GATAGATATC
  GAATTTATCC CCCCAAAGAA GGTTTTTTTT TTTTTTTTGC GAAGATGAAT TGGTGTTACA
  Y
  TAATCCTTTT CCAGACAGAA TCTACCCTGT CCATAGTGGG GTGACAAGTA AGACTTAGTG
  ACCTTTTGCA TAGCAGCACA ACACCTGGAT GCTCACAACA GCCACTGTGT TCACCTGCAA
  GAGTATAAAA TGCAATGTGC TTTTTAGGGT GCAGGACAGA TACAGTGTGG ACCAGGTGCT
  GGGTCAAATA AAATTATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37489775	NES08920273	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27261855					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37489775	NES08920273	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148728776 () rs orientation: forward

Symbol	Name	Function Class
Rr374042	regulatory region 374042	1928 bp upstream
Rr566980	regulatory region 566980	1760 bp distal