rs27263709 SNP Detail

Summary

• ID
  rs27263709
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144148488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTATGCTGA GTCCCCAGCC GGGCAAGAAC ATGGTGGCTG
  CCAGGTCCCA AAACACTCCA CTGGATTAAT GTTAAAACTG TGACCTTTAC AAGTCTTAAT
  W
  CAACAATAGC ATCGATGAAG GGAAAGAAAT CTGAAACATT TCCCATTTGC TCAGAACTGT
  GCTTGTAGCC ATGTTAAGTA ATTCATTTAC AGTAACACA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37481848	NES08957624	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	A	T	A	T
ss147790705	ENSMUSSNP2509825	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27263709					SNP	A	A	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481848	NES08957624	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144148488 () rs orientation: forward

Symbol	Name	Function Class
Ovol2	ovo like zinc finger 2	Intron
Rr566440	regulatory region 566440	470 bp distal
Rr566441	regulatory region 566441	1670 bp proximal