rs27263842 SNP Detail

Summary

• ID
  rs27263842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144073701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCAGAGG CAGGCAGATA
  TCTGTGCGTT TGAGGCCAGC CTGGTCCACA TTGCTAGTCA AGGCTACACA GTGAGAATCT
  GTTAATTTTT TTTTCTTTTG AGACAGAGTC TCATGAGTAG CTCAGGTTAG CTAACCCATG
  ATCCCCCTGC TTCAACCTTC TGAGTGCTAG GATGATAGTT GCTAGCCAGC AAGCCTGGCT
  Y
  TTAGTTTATA ATTGAATTTT TTAAAATGCC CATCGTAGAC AGAGTCCTCA AAAAGCATAC
  GATATCATAT TCTGCTTCTG ATCATTCATC TTCATAATTA AGATAAATGG ACTTGAAATG
  GCCAGAGGGC TGGAGTGTTG CTGTGAAATC ATGAGGACTA CTGTGGATCC CAGCATCCAC
  ATAACAAGCT GGGTGCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37481983	NES08932030	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27263842					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481983	NES08932030	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144073701 () rs orientation: forward

Symbol	Name	Function Class
Gm75267	predicted gene, 75267	within coordinates
Rr397360	regulatory region 397360	1768 bp upstream
Rr566412	regulatory region 566412	232 bp distal
Rr566413	regulatory region 566413	1773 bp proximal