rs27270044 SNP Detail

Summary

• ID
  rs27270044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132822440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTTCAG CACAGCCAAC
  TTAACCTTCT TCCTCTTATG CTTATTCTTC TTGGGAGTGG TGTGAGACTT CTTTGTAAAA
  TTAATTATTT TACTATAAGT TTAAACAGTG AATTAATCTG GCAGCTGTAT TTCTTTACCT
  TTGCTCGTCC CCAATAGCCA TACAGAGAAA CAAAGATTTG TTTCAAGCTG CTCCTCACTA
  Y
  TGGGCAGTTA AATGATCCAT AATAACTTCT ATGTTAATCT GGTGACCTCC CTGCTCCATC
  TCATGATACT CGCATATTAT TGTTGATGTG GATCTTTGAG CTTCAGATGT TTTTTCTCAT
  AATGTCTTCA GCCTCTCCTC CTTGTGGCTG ATCTGAATCT CCCTCTACCT CTCTCCTTGT
  GGCTCCAAAT TCTCCCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37463168	NES08981959	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T	T	T		T	T	T	T		T
ss320510362	CHEV_2_132806256	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27270044					SNP	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463168	NES08981959	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132822440 () rs orientation: forward

Symbol	Name	Function Class
Gm14101	predicted gene 14101	within coordinates