rs27270054 SNP Detail

Summary

• ID
  rs27270054
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132821346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTACTT CAAGAGGGAA
  GAACCAGGGC ACAGCAACAC TTAAAGAAAA ATTAAAGTCC GACAATGACA AAGCTCAAAG
  TCCTACATCT GGGATTCCCT CATGGTCTTC TGGGCTCTAA GGGCTTCTGC AGCTCTGAAT
  GGGCTCTGCC GTTCACAGCA CACGAACCTC ATTTGACAGG CGGGCTCAGG CTCTTCTCCA
  S
  AGCTGCAAGA GCATCAAACA CTCTTAACCA TGGACCCGTT TCTCCAGTTT CCTAAGTGAT
  CATTTTGATA TGATTTTGAA TTCAGTGTTT GAGCATTTTA TTGAGAATTT ATTGAATATC
  ACAGTTACCG GTTTTATAAA AAGAGTTTGT AAACCCTCCT TTTCTGTTTT ATGAAGTAAC
  TTGAGTAGGT TTGGTAGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463178	NES08981949	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27270054					SNP	G	G	G	G	C	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463178	NES08981949	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132821346 () rs orientation: forward

Symbol	Name	Function Class
Gm14101	predicted gene 14101	743 bp downstream