rs27270055 SNP Detail

Summary

• ID
  rs27270055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132821308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGTGGGC TCCTGCAAAT
  TGAAAGACTT ACATGGTTTT TTTTACTTCA AGAGGGAAGA ACCAGGGCAC AGCAACACTT
  AAAGAAAAAT TAAAGTCCGA CAATGACAAA GCTCAAAGTC CTACATCTGG GATTCCCTCA
  TGGTCTTCTG GGCTCTAAGG GCTTCTGCAG CTCTGAATGG GCTCTGCCGT TCACAGCACA
  Y
  GAACCTCATT TGACAGGCGG GCTCAGGCTC TTCTCCAGAG CTGCAAGAGC ATCAAACACT
  CTTAACCATG GACCCGTTTC TCCAGTTTCC TAAGTGATCA TTTTGATATG ATTTTGAATT
  CAGTGTTTGA GCATTTTATT GAGAATTTAT TGAATATCAC AGTTACCGGT TTTATAAAAA
  GAGTTTGTAA ACCCTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463179	NES08981948	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27270055					SNP	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463179	NES08981948	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132821308 () rs orientation: forward

Symbol	Name	Function Class
Gm14101	predicted gene 14101	781 bp downstream