rs27270059 SNP Detail

Summary

• ID
  rs27270059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132820977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTCTCT TCTTAGATAA
  CTCTAGCTTC TGTTGAGTTG ATAAACAAAC GGACAAACAA ACAATTCCCT TTAACTCCAA
  CTAGATCAAC TGACCCCTTG TTGATTTGAC ACACCAACAA ATTCCTATTA AGCTATAACC
  CTTACTTAAT TGCTTATCCC CAAGATATCA ATACTAGTAC CACAGCATAA AAGATCCCAG
  Y
  ATTTAAAAGT TCCACAGTAT TTAAAAATTC AAGCACTTTA ACAGTTTAGT ATCTTTAAAA
  TATCCAAGTT CTCTTTCAAA GTTCCTGTCT TTTTAAAATT CTGAATCCTT CTAAGATTTC
  AAAGTCACAT TATTGTGGGC TCCTGCAAAT TGAAAGACTT ACATGGTTTT TTTTACTTCA
  AGAGGGAAGA ACCAGGGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37463183	NES08981944	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C	C	T		C	C	C		C
ss147624162	ENSMUSSNP2976913	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				C
ss320510359	CHEV_2_132804793	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27270059					SNP	C	C	C	T	C	C	C	C	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463183	NES08981944	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132820977 () rs orientation: forward

Symbol	Name	Function Class
Gm14101	predicted gene 14101	1112 bp downstream
Rr565567	regulatory region 565567	1867 bp distal