rs27270060 SNP Detail

Summary

• ID
  rs27270060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132820863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGATTTG CTTTTTGTGG
  TTTTCTTATG TAACTCCACC CACAGTGAGC TGGGCCCTCC CACATAAAGA AAATTCCCCA
  CAGACTTGCT TATAGGCATT TTATTTTTCA GCTGAGGTTT CTCTTCTTAG ATAACTCTAG
  CTTCTGTTGA GTTGATAAAC AAACGGACAA ACAAACAATT CCCTTTAACT CCAACTAGAT
  Y
  AACTGACCCC TTGTTGATTT GACACACCAA CAAATTCCTA TTAAGCTATA ACCCTTACTT
  AATTGCTTAT CCCCAAGATA TCAATACTAG TACCACAGCA TAAAAGATCC CAGCATTTAA
  AAGTTCCACA GTATTTAAAA ATTCAAGCAC TTTAACAGTT TAGTATCTTT AAAATATCCA
  AGTTCTCTTT CAAAGTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463184	NES08981943	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27270060					SNP	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463184	NES08981943	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132820863 () rs orientation: forward

Symbol	Name	Function Class
Gm14101	predicted gene 14101	1226 bp downstream
Rr565567	regulatory region 565567	1753 bp distal