rs27270063 SNP Detail

Summary

• ID
  rs27270063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132820561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTGCGA AACTGCTAGA
  TCCTGGGATT TCCATTCACA GCTGATATGA TCATTGTTGG GGAGTTGGAC TACAGACTGT
  AAATCATCAA CGAACTCCCT TACTATATAG AGACTACCCA TAAGTTCTGT GACTGTAGAG
  AACCCTGATG AATACAATGA CCAAAAGCAA CCTGGGGAGA AAAGGGTCTA TTTCATCTTA
  Y
  AGTTCTCAGG TGACACTCTG TAACTGAGGG AAGTTAGGGC AGACACTCAA GGCAGAAACG
  TAGTAACTGG AACCAAGGAG AGGCCACAGA GTAATGTTGC TCACTGATTT GCTTTTTGTG
  GTTTTCTTAT GTAACTCCAC CCACAGTGAG CTGGGCCCTC CCACATAAAG AAAATTCCCC
  ACAGACTTGC TTATAGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37463187	NES08981940	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T		C	T	T	C		C	T	T	C		C
ss45304269	mCV23921818	ABI	CRAMUS_MOUSE	f	SNP		C	T			T		T
ss320510357	CHEV_2_132804377	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27270063					SNP	C	C	T	C	T	T	C	T	T	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463187	NES08981940	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132820561 () rs orientation: forward

Symbol	Name	Function Class
Gm14101	predicted gene 14101	1528 bp downstream
Rr565567	regulatory region 565567	1451 bp distal