rs27270066 SNP Detail

Summary

• ID
  rs27270066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132820319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTGGGA GATACAAGTT
  TCTGACCTGG ATCTTGGCAT GGAGATCTTG AGGCCTAGTG ACAATGAATT CCAGGAGACT
  AAGGCAAGGG GATCTCCGAG TTCCAGGTCA TCTGGGACAA AGCAAGTCCC AGATCCAGGC
  ATGGTGGCAC ACACCTTTAA TCTGGGCCAC ATCTTCTGCT GGAGACCTAC ATAAGGACAT
  Y
  GGAAGAAGAA AGGCTCTTTC CTCTTTGCCT GCTTGCTTTG TGGGATTGCG AAACTGCTAG
  ATCCTGGGAT TTCCATTCAC AGCTGATATG ATCATTGTTG GGGAGTTGGA CTACAGACTG
  TAAATCATCA ACGAACTCCC TTACTATATA GAGACTACCC ATAAGTTCTG TGACTGTAGA
  GAACCCTGAT GAATACAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463190	NES08981937	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27270066					SNP	C	C	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463190	NES08981937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132820319 () rs orientation: forward

Symbol	Name	Function Class
Gm14101	predicted gene 14101	1770 bp downstream
Rr565567	regulatory region 565567	1209 bp distal