rs27270067 SNP Detail

Summary

• ID
  rs27270067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132820316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGGCTG GGAGATACAA
  GTTTCTGACC TGGATCTTGG CATGGAGATC TTGAGGCCTA GTGACAATGA ATTCCAGGAG
  ACTAAGGCAA GGGGATCTCC GAGTTCCAGG TCATCTGGGA CAAAGCAAGT CCCAGATCCA
  GGCATGGTGG CACACACCTT TAATCTGGGC CACATCTTCT GCTGGAGACC TACATAAGGA
  Y
  ATCGGAAGAA GAAAGGCTCT TTCCTCTTTG CCTGCTTGCT TTGTGGGATT GCGAAACTGC
  TAGATCCTGG GATTTCCATT CACAGCTGAT ATGATCATTG TTGGGGAGTT GGACTACAGA
  CTGTAAATCA TCAACGAACT CCCTTACTAT ATAGAGACTA CCCATAAGTT CTGTGACTGT
  AGAGAACCCT GATGAATACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37463191	NES08981936	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C		C	C	C		C
ss320510355	CHEV_2_132804132	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27270067					SNP	C	C	T	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463191	NES08981936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132820316 () rs orientation: forward

Symbol	Name	Function Class
Gm14101	predicted gene 14101	1773 bp downstream
Rr565567	regulatory region 565567	1206 bp distal