rs27270780 SNP Detail

Summary

• ID
  rs27270780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133981380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTATATT ATACATATAT
  AAAAAAGGAA TATCTGAAAA TTTTGATTAA AATATGGAGA TAAAATACTT ACAAATATTA
  TTGCAAGCTA CTAATTTTTC TAAGGAAAAA TGTCTTTCTT ACATAAGTTT TAAGATTTAA
  GTGGTATCAA CATAATTCAG TAAAATGTGT ATTTTCCAAA CTATTAGCCT GAGCCTGACC
  Y
  GGACAGACAC ACCTCTCATG GACACACCTA TTTTTGTCCC ACCTATGTGA GGCAGGAAGG
  TTACTTGATA CTCAACTAAT TGTGCTGGGA AATATGGAGT TCTTGGAATA AAAAAAGCCT
  CCACCAGCGA AAAGCAAGCA AACAGTGATG GAAGCAAAAC ACTCTGATGA TTGTGAGTTT
  TCAGAACATC AGGACTATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37459007	NES08985126	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27270780					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37459007	NES08985126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133981380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12318	CpG island 12318	1637 bp distal