rs27270784 SNP Detail

Summary

• ID
  rs27270784
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133979709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTCTGG TTGCAGCAGT
  GAGGGGTGGG CACAGTCAAA CTCCCAGCAT CCACCTCCAC AAGTGGCCCT AGCCCTGTGG
  TGGACCAGAC ACAGGACACC ATTTTAACCC ATATCGCGTG CGCGCGCGCG TGCCTGTGTA
  TGTGTGTGTG TGTGTGTGCG CGCGCGCGTG CGCGCGTGCG TGTGTTGGCG TGCGCGTGTG
  H
  GCACATGTCC TTTTCTTCTT CTGACACAGA CTTTACTCAT TTCTGTAGAC CTATATCATG
  AAAATATGCC AAGGAAAACA GTCTGGAAGG ACACAAAGAA GAGAAACAAG TTGTTGAAAT
  AAATGATTGG CAAACAAGGG TATTGATAAG TGCACCACAG ATTAATTAAA CTCCTTCAAA
  AATTGCAAAA ATGGTGTCTA                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37459011	NES08985146	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	T	A	T	A	A	T		A	A	T		A
ss320512719	CHEV_2_133963525	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27270784					SNP	T	A	T	A	T	A	T	A	A	T	A	A	A	T	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37459011	NES08985146	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133979709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12318	CpG island 12318	within coordinates