rs27270787 SNP Detail

Summary

• ID
  rs27270787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133978265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTATTTTT ATTTCAGACC
  AACTTGGAGA ATGAGAAATT CAGTGTGCAT GCTTATTATC ATTTTACTCA TTAATTATTT
  CATATATTTA ATCTGTTGAA CAAAAATATA AATCATTGCT TCCTAGGGAA ACCCTCTTTA
  CTTCCAAATT GTGATAGTTG TTACACGAGC TCTTTCTTCT TCTTGGGGAG ATGCTTGTTC
  R
  ATGTCAAGGA CCTTCCAAGT TTCAGCCTCA GTTGTATGTG AGTAATTTTA AGGCTGACCA
  TTTGGCACTG AACAACCAAT TGGTAAACTC TTCCCTGGGG AAGGCTACCT CACCCACTTC
  CAGCTTTCCT AGTTGCTTAT AGTTCTCTGT GTAGGGGTGA GGTCTTAGAG GCTTTTATCT
  GTTCAGTTTA TCATATTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37459014	NES08985243	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27270787					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37459014	NES08985243	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133978265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12318	CpG island 12318	1253 bp proximal