rs27271233 SNP Detail

Summary

• ID
  rs27271233
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129717127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAA CCATCCCCGA GAAGTGGAGG
  K
  TAGGTGGTTA GAAGTGAAGG AGGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37474165	NES08992389	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	T	G	T	T		T	T	T	G		G
ss45201025	mCV25265811	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss147591302	ENSMUSSNP2960893	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
ss320505906	CHEV_2_129700943	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27271233					SNP	T	T	G	T	T	T	T	G	T	T	G	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37474165	NES08992389	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129717127 () rs orientation: forward

Symbol	Name	Function Class
Rr564988	regulatory region 564988	999 bp distal
Rr564989	regulatory region 564989	1475 bp distal