rs27271245 SNP Detail

Summary

• ID
  rs27271245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129716130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCAAG ACTGAGTTTC
  AGAATTATCA GCGAGGTTTG GCAGAATTTC TGTGCAAGTG TTATTCTTAT AGTCACAGGT
  TCTGAATAAG ATGTGAAAGG CACTGGCTGT CAGAACGACC TCGAATTTTT TCCCCTCCAG
  TTCACACGGA GCCACTGAGA ATGTCTGGGC AAGACAGGAA CAGAAGAGCC TTGTTTTGGA
  R
  AGATTAACTG GACCGTGCAC ATTGTTCATT CGTTTGTGTA ACAAGCAGTG CTTTTTAAAA
  ATATCTTGGC CAGGCTGTGG AATGCAGTAG TGACCGGATG GAGGTGCTAT TAGCTTCCAT
  GTAACTCCGA GCCTAGGAGC AATGGCGGGG GTGGGGTGTG TGTGGGAGAC CCAGATAGGG
  CATCACTTCA GTCCTAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37474177	NES08992421	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27271245					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37474177	NES08992421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129716130 () rs orientation: forward

Symbol	Name	Function Class
Rr564988	regulatory region 564988	2 bp distal
Rr564989	regulatory region 564989	478 bp distal