rs27271250 SNP Detail

Summary

• ID
  rs27271250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129715669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATACACAC GTTCTACACA
  AAGCAATGTT TCTTTCATGT ACACTCAATC ATAGGCTCAG ATTTTCTCCC GCACATTTGC
  AAGCACCCAG GCACACACAC TCTATCCATG GCTTGCCTAT TTACATCCGC CTTAGACTGC
  CTGGCACTCA GAACCAGGGA TGCTGCCGCC CTCTCCTGGA AAGATTTGGG AAGTGCACCC
  R
  GGGTCTTGCC AGGAAGTGCT TGGTTGCAAA CCTCATTCTA ATCTTAATTC ACCTTTACAG
  GTGTGGATGA TTTCTGCTCA CTGTGTCCCC CAAGGCCCCT TCAAGGGGTC TCTACCATTT
  CCAAGATTCC TTTCCTGACT GTGACATTTG GTTCTGGCCC TGGACATCAG GGGGGGGGGG
  GAGTTCTAGC CAGATTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37474182	NES08992416	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27271250					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37474182	NES08992416	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129715669 () rs orientation: forward

Symbol	Name	Function Class
Gm75517	predicted gene, 75517	1752 bp upstream
Rr564988	regulatory region 564988	within coordinates
Rr564989	regulatory region 564989	17 bp distal