rs27273694 SNP Detail

Summary

• ID
  rs27273694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131172359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGGTATTC AGAACAGAGC CCTGAATACT AACCACCAGC
  CTTGGGGGTT GTTAGGTCTA TGTGATAACT AAGAAAAGGC TGTGAAATCA GAGCAAGTGG
  Y
  TCTAAGGACA GAAAGAGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTACTGGA
  GGAAATGATG CACATGGAGG TGGATGTGTG GGTGCCACG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37469218	NES08983270	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		C	C	T	T	C	T	T	C	T
ss45259251	mCV23913186	ABI	CRAMUS_MOUSE	f	SNP						T		C
ss147603141	ENSMUSSNP6776475	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27273694					SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37469218	NES08983270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131172359 () rs orientation: forward

Symbol	Name	Function Class
Rnf24	ring finger protein 24	within coordinates
Tssr26391	transcription start site region 26391	1450 bp upstream