rs27273704 SNP Detail

Summary

• ID
  rs27273704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131169372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGAGGGAT TCAAACTTGT AATCTCCTAT TTTCTGGTCT
  GTTTCAGGTA CACGGTGCAT ATACTATAAT ATTACAAATC TATCAGTTGT TAATTACTGG
  R
  TTCTATTTAA TGCATGGTTT TACAATTAGC TTGGTCAAAG TTCTATTTTG TTTGCTTAGT
  TTATTCTTTG AGACAGGATG CCCCTACATA AGCCCTGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37469228	NES08983357	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G	G	A	G		A	A	G	A
ss147603039	ENSMUSSNP7077801	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27273704					SNP	A	A	A	A	A	A	G	G	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37469228	NES08983357	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131169372 () rs orientation: forward

Symbol	Name	Function Class
Rnf24	ring finger protein 24	within coordinates
Tssr26391	transcription start site region 26391	1530 bp downstream