rs27275135 SNP Detail

Summary

• ID
  rs27275135
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131825229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAG CATGATAATA GCACAAAGGA
  S
  CAGTGTAACA ACTCAATACC ACATT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37467159	NES08994666	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G	C	C	G		G	C		G	C		C
ss147615370	ENSMUSSNP849091	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss320508128	CHEV_2_131809045	CHEVERUD	SCREENING_POP	f	SNP												C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27275135					SNP	C	C	G	C	G	C	C	G	C	G	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467159	NES08994666	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131825229 () rs orientation: forward

Symbol	Name	Function Class
Rr565362	regulatory region 565362	194 bp distal
Rr565363	regulatory region 565363	546 bp distal
Rr565364	regulatory region 565364	317 bp distal