rs27275142 SNP Detail

Summary

• ID
  rs27275142
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131824826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTAGAGC TAGGAAGCAG
  ATGTTATGCA GTCATCGTCA CCACCAGAGG GCATCCTAAC ATCAACCAGG ACAGGCAAGG
  GTCCATGTCT AGTCCCTCTC ACAGAAAGAT GCAGGGAGTT TTTATTTGTT TGTTTTTGTT
  TGTTTTCATA AGCTACCACC TAGCCAGGTT GAAGAGAGGC CAATCTTCCC TTAGTTCCAA
  M
  TCCTTCCGGG ATAGACAATG ACCTTGAATC TCTCCTAGAG CTTCTGTCTC CTGTCCTGCC
  TCCACAGGTG CCCTCTGGAG ATGAGTTATT TAGGACCTCC CCTAATGCAT GCTGGGAGAA
  CCTCAGCCCA AGGCTCTGCC TGAACAGAAG TTGATGTTGA AGTGTGCCCC AGAGACACAT
  AAACTGACAC TCATCCTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37467166	NES08994659	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27275142					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467166	NES08994659	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131824826 () rs orientation: forward

Symbol	Name	Function Class
Rr565361	regulatory region 565361	1625 bp distal
Rr565362	regulatory region 565362	within coordinates
Rr565363	regulatory region 565363	143 bp distal
Rr565364	regulatory region 565364	65 bp proximal