rs27275143 SNP Detail

Summary

• ID
  rs27275143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131824814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGCCCAT CACTGGTAGA
  GCTAGGAAGC AGATGTTATG CAGTCATCGT CACCACCAGA GGGCATCCTA ACATCAACCA
  GGACAGGCAA GGGTCCATGT CTAGTCCCTC TCACAGAAAG ATGCAGGGAG TTTTTATTTG
  TTTGTTTTTG TTTGTTTTCA TAAGCTACCA CCTAGCCAGG TTGAAGAGAG GCCAATCTTC
  Y
  CTTAGTTCCA AATCCTTCCG GGATAGACAA TGACCTTGAA TCTCTCCTAG AGCTTCTGTC
  TCCTGTCCTG CCTCCACAGG TGCCCTCTGG AGATGAGTTA TTTAGGACCT CCCCTAATGC
  ATGCTGGGAG AACCTCAGCC CAAGGCTCTG CCTGAACAGA AGTTGATGTT GAAGTGTGCC
  CCAGAGACAC ATAAACTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37467167	NES08994658	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27275143					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467167	NES08994658	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131824814 () rs orientation: forward

Symbol	Name	Function Class
Rr565361	regulatory region 565361	1613 bp distal
Rr565362	regulatory region 565362	within coordinates
Rr565363	regulatory region 565363	131 bp distal
Rr565364	regulatory region 565364	77 bp proximal