rs27275144 SNP Detail

Summary

• ID
  rs27275144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131824794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCACTTG TACAGGCTAA
  CTTTGCCCAT CACTGGTAGA GCTAGGAAGC AGATGTTATG CAGTCATCGT CACCACCAGA
  GGGCATCCTA ACATCAACCA GGACAGGCAA GGGTCCATGT CTAGTCCCTC TCACAGAAAG
  ATGCAGGGAG TTTTTATTTG TTTGTTTTTG TTTGTTTTCA TAAGCTACCA CCTAGCCAGG
  Y
  TGAAGAGAGG CCAATCTTCC CTTAGTTCCA AATCCTTCCG GGATAGACAA TGACCTTGAA
  TCTCTCCTAG AGCTTCTGTC TCCTGTCCTG CCTCCACAGG TGCCCTCTGG AGATGAGTTA
  TTTAGGACCT CCCCTAATGC ATGCTGGGAG AACCTCAGCC CAAGGCTCTG CCTGAACAGA
  AGTTGATGTT GAAGTGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37467168	NES08994657	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27275144					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467168	NES08994657	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131824794 () rs orientation: forward

Symbol	Name	Function Class
Rr565361	regulatory region 565361	1593 bp distal
Rr565362	regulatory region 565362	within coordinates
Rr565363	regulatory region 565363	111 bp distal
Rr565364	regulatory region 565364	97 bp proximal