rs27275149 SNP Detail

Summary

• ID
  rs27275149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131824342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGAAAAG ATGGCGGGAG AAGGAGGACA GAATGAACAA
  ATGAACGAAT GAACAAAAGA AGAAAGGGGA AATACCGAAG TGCAAAATGC ACCAGAAATA
  Y
  GTCAAAAACT ATGTCCAAAC CCACTGAACT CAGGAAAGCA TAGTTCAAGG TGGGAAGCTA
  TCACATTTTC CCCCTTACTT ATGCAAAATA GTATGGGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37467173	NES08994652	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T		C		C	T		C	C	T	C		T
ss45231753	mCV24483753	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		T
ss147615359	ENSMUSSNP4399660	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
ss320508126	CHEV_2_131808158	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27275149					SNP	T	T	C	T	C	T	T	C	C	T	C	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467173	NES08994652	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131824342 () rs orientation: forward

Symbol	Name	Function Class
Rr565361	regulatory region 565361	1141 bp distal
Rr565362	regulatory region 565362	104 bp proximal
Rr565363	regulatory region 565363	320 bp proximal
Rr565364	regulatory region 565364	549 bp proximal