rs27275157 SNP Detail

Summary

• ID
  rs27275157
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131823483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCTCTA AAGGAGAGTG
  TTTGGAGGCC AGGTCCACAC AGGTAGGATA ATATGAAACT GTCAGGATGA ACCTAGATCC
  AACATCAGGG TCCTTTCAAG AGAATAGTCT GTGCTTCGGT GTCCCCGCAT AGAAGGATAC
  TGAATTTCTC AAAGCCAAAG AACAGTTAAG GGAGTTAGAG ATTGACAAGA CAGAGCCCAC
  R
  TCCCCAACCA TCTCCGAACC CAACATCCAC ACTGAAAGCA TTCTTCATGG GTACCGGTGC
  TTACTCATAA ATGAGCAGTA TCATTAACTT GTGGGGTGTG TGTGTTTGCA TGCGCATGTG
  CACGTATGTG AGTACTCAAG TGTGCAAGTC TGTGCATATG AAGGCCAGAG GACAACCCCA
  CGTGTCTCTC CTTAAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37467181	NES08994644	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27275157					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37467181	NES08994644	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131823483 () rs orientation: forward

Symbol	Name	Function Class
Rr565361	regulatory region 565361	282 bp distal
Rr565362	regulatory region 565362	963 bp proximal
Rr565363	regulatory region 565363	1179 bp proximal
Rr565364	regulatory region 565364	1408 bp proximal