rs27275781 SNP Detail

Summary

• ID
  rs27275781
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130123229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC TGCAAGAACA AGCCATCCCC
  W
  AGTTTCCTGT TCACAGGCCA GAGGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37472213	NES08984264	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27275781					SNP	T	T	T	T	T	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37472213	NES08984264	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130123229 () rs orientation: forward

Symbol	Name	Function Class
Idh3b	isocitrate dehydrogenase 3 (NAD+) beta	within coordinates
Nop56	NOP56 ribonucleoprotein	1996 bp downstream
Rr55611	regulatory region 55611	1771 bp proximal
Tssr26286	transcription start site region 26286	1935 bp upstream
Tssr26287	transcription start site region 26287	1886 bp upstream
Tssr26288	transcription start site region 26288	1817 bp upstream
Tssr26289	transcription start site region 26289	1657 bp upstream