rs27275792 SNP Detail

Summary

• ID
  rs27275792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130120796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTCAGT GTTCCCTGGG
  AGCTCTGCAT GATATCCATC GTGAGCAGCA TACAGGGGGT TTTCTCTAGG GTTTAAGAGG
  GCCAGGGAAA TTATAAAATG TGAGAGTAGG TAGATCATTA AGTCACCAGA AGTACTAGGT
  TTGCTCTTCT GCCTGGATTC TAATGGGAGC TGTGGCTGCT AACAATTGTA AGCAATGTCC
  Y
  GTGTCTGATT CCCCCTTCAG GAGGTAAATG AAAAATCTAA GAAGAAAAAG AAGTTAAAAC
  CCCAGGAAAA TGGAATGGAA GACCCACCTG TCTCTCTACC TAAATCCAAG AAAAAGAAAG
  CTCCCAAGGA GGAGTTGGCC AGTGACCTTG AAGAGATGGC CACTAGCAGT GCTAAGAGAA
  AGAAGTCCTC ACCTAAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37472224	NES08984396	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27275792					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37472224	NES08984396	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130120796 () rs orientation: forward

Symbol	Name	Function Class
Gm23187	predicted gene, 23187	1596 bp downstream
Gm23650	predicted gene, 23650	1110 bp downstream
Idh3b	isocitrate dehydrogenase 3 (NAD+) beta	433 bp downstream
Nop56	NOP56 ribonucleoprotein	within coordinates
Snord57	small nucleolar RNA, C/D box 57	788 bp downstream
Tssr20203	transcription start site region 20203	1675 bp downstream
Tssr20204	transcription start site region 20204	1176 bp downstream
Tssr26286	transcription start site region 26286	482 bp downstream
Tssr26287	transcription start site region 26287	499 bp downstream
Tssr26288	transcription start site region 26288	599 bp downstream
Tssr26289	transcription start site region 26289	753 bp downstream