rs27275799 SNP Detail

Summary

• ID
  rs27275799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130119912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTTGTCA TTTCAAGGGT
  TGTAATTGAC TTTGTTTACA CACGCACACA CATCTAGAGG TCCCCACAAG TGTATTTGGG
  GAAAAACTCC GAGAACAAGT TGAGGAACGG CTGTCTTTCT ATGAGACTGG AGAGATCCCA
  CGGAAGAACC TGGATGTCAT GAAGGAAGCT GTGGTTCAGG TCAGTGTGTG CTTGGTTGTG
  R
  TAGCTGAGTG CCAGAAAGAC TGTTGGAAAG GATGAACGAA CTTGGCCTGA CCTTCAGAAA
  TGGAGGCAAT ACAACTGATT TAATGAGCCT GATCCAGCAA GACTAGGAGT GTTGTGGCAA
  GTCAGGGGTC TTCTGGGTTT TCAGCGCCTT GCTTTTTTGC CAGGCAGAGG AAGCGGCTGC
  TGAAATCACC AGAAAGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37472231	NES08984389	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27275799					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37472231	NES08984389	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130119912 () rs orientation: forward

Symbol	Name	Function Class
Gm23187	predicted gene, 23187	712 bp downstream
Gm23650	predicted gene, 23650	226 bp downstream
Gm24451	predicted gene, 24451	1623 bp downstream
Idh3b	isocitrate dehydrogenase 3 (NAD+) beta	1317 bp downstream
Nop56	NOP56 ribonucleoprotein	within coordinates
Rr38369	regulatory region 38369	1712 bp distal
Rr55610	regulatory region 55610	1311 bp distal
Snord57	small nucleolar RNA, C/D box 57	34 bp upstream
Tssr20203	transcription start site region 20203	791 bp downstream
Tssr20204	transcription start site region 20204	292 bp downstream
Tssr26286	transcription start site region 26286	1366 bp downstream
Tssr26287	transcription start site region 26287	1383 bp downstream
Tssr26288	transcription start site region 26288	1483 bp downstream
Tssr26289	transcription start site region 26289	1637 bp downstream