rs27276594 SNP Detail

Summary

• ID
  rs27276594
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132043403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGGAGA GTTTAGGAGT
  AGAGGGCAGG TATGCCAGCC ATACCAAGTA ACAGGTATGC TGGGACTGAG GAATGCTGGG
  AGAACCAGGT AGCCAGGTCC ATTTTGATAT GTTAAAGGAT GGAGGTTGGA GCCAGGCCTT
  TTTATGTTCT AAACATACAC TGCACTACTG ACCTCATCCT CAGAAACTCC AATCTTACCG
  M
  AATATGTTTT GAGACTGATC TTTCTGGATC ATATGCTTGA TCTGTACTAG GTCAGCTAGA
  TCTTGCTATG TAGACCGAAA TGGCCCTTTA ACTCAAAATT CTCCTGCCTC AGCCTCCCTA
  GTACTTAGAT GACAAAGTTA TTTCTCTCAA GTATTTTGAT GAAAGGAATG CAAATGAACT
  GTTATAGAAA ACTGGCATGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37466129	NES08990063	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27276594					SNP	A	A	A	A	A	C	A	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37466129	NES08990063	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132043403 () rs orientation: forward

Symbol	Name	Function Class
Gm14051	predicted gene 14051	within coordinates
Rr373882	regulatory region 373882	within coordinates
Rr565420	regulatory region 565420	1765 bp proximal