rs27277853 SNP Detail

Summary

• ID
  rs27277853
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144371895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCTGAAT TACTGTGTTT TTGTTTGTTT GTTTGTTTTG
  TTTTTTAAAC TTCTAGCCTT GTGTTATACT TCAAGGCTCT AGATGCAGAG ATTATAGGGA
  K
  AGTCGAATCT TTTATTACAC CTTTGTCTTT ACCTTCGTGG CTCAGAATTG GCAAACTTCT
  CTATGAAGTA GTAAATAAAA TAACTTTTGT GGCCCATCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37481192	NES08947855	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	G	T		T		T	G	G	T	G	G	T
ss45340054	mCV22517841	ABI	CRAMUS_MOUSE	f	SNP	G	T					T		G
ss147798153	ENSMUSSNP1468551	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T							G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27277853					SNP	G	T	T	T	G	T	T	T	G	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481192	NES08947855	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144371895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	1864 bp distal
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	within coordinates
Rr566474	regulatory region 566474	1585 bp distal