rs27277856 SNP Detail

Summary

• ID
  rs27277856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144371587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT CCCACTGAGG GTCTTTAGGA
  Y
  AAAGCACAGC CTCAGCTTCA GAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37481195	NES08947851	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C		C	C	C		C	T	C	C		C
ss45285215	mCV22517832	ABI	CRAMUS_MOUSE	f	SNP		C	T				T	C
ss147798143	ENSMUSSNP727672	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
ss320536515	CHEV_2_144355403	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27277856					SNP	C	C	T	T	T	C	T	C	C	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481195	NES08947851	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144371587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	1556 bp distal
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	within coordinates
Rr566473	regulatory region 566473	1909 bp distal
Rr566474	regulatory region 566474	1277 bp distal
Tssr20541	transcription start site region 20541	1894 bp downstream
Tssr20542	transcription start site region 20542	1865 bp downstream