rs27277857 SNP Detail

Summary

• ID
  rs27277857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144371329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGCCAATA TACTAATTGT AAGGCCAAAA TTTGTGGCTT
  GATTCCAAAC CAAGGAAAGG ATCAGAATGT CTGAATAGGA AGAAAAAAAT ACTCATCTGC
  Y
  TGCCATTTGA CAAGATGAGG GAACTGCATG CAATTCTGTT ATAACTAATT GTTATTAGCT
  TCAGTGACAC AAAAAGACAC GTGGGTGTGG TCTGTTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37481196	NES08947850	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	C	T	T	C	T	C
ss45224022	mCV22517831	ABI	CRAMUS_MOUSE	f	SNP		T	C					C	T
ss147798138	ENSMUSSNP6380199	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27277857					SNP	T	T	C	C	C	T	C	C	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481196	NES08947850	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144371329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	1298 bp distal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	1995 bp upstream
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	within coordinates
Rr566473	regulatory region 566473	1651 bp distal
Rr566474	regulatory region 566474	1019 bp distal
Tssr20540	transcription start site region 20540	1882 bp downstream
Tssr20541	transcription start site region 20541	1636 bp downstream
Tssr20542	transcription start site region 20542	1607 bp downstream
Tssr26607	transcription start site region 26607	1985 bp upstream
Tssr26608	transcription start site region 26608	1977 bp upstream
Tssr26609	transcription start site region 26609	1959 bp upstream
Tssr26610	transcription start site region 26610	1897 bp upstream
Tssr26611	transcription start site region 26611	1872 bp upstream