rs27277858 SNP Detail

Summary

• ID
  rs27277858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144371291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA TTCCAAACCA AGGAAAGGAT
  Y
  AGAATGTCTG AATAGGAAGA AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37481197	NES08947849	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	T	T		T	C	T	T		T
ss45202236	mCV22517821	ABI	CRAMUS_MOUSE	f	SNP		T	C					C	T
ss147798133	ENSMUSSNP6489739	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss320536514	CHEV_2_144355107	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27277858					SNP	T	T	C	C	C	T	C	C	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481197	NES08947849	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144371291 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12356	CpG island 12356			1260 bp distal
Dzank1	double zinc ribbon and ankyrin repeat domains 1			1957 bp upstream
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr566472	regulatory region 566472			1984 bp distal
Rr566473	regulatory region 566473			1613 bp distal
Rr566474	regulatory region 566474			981 bp distal
Tssr20540	transcription start site region 20540			1844 bp downstream
Tssr20541	transcription start site region 20541			1598 bp downstream
Tssr20542	transcription start site region 20542			1569 bp downstream
Tssr26607	transcription start site region 26607			1947 bp upstream
Tssr26608	transcription start site region 26608			1939 bp upstream
Tssr26609	transcription start site region 26609			1921 bp upstream
Tssr26610	transcription start site region 26610			1859 bp upstream
Tssr26611	transcription start site region 26611			1834 bp upstream