rs27277860 SNP Detail

Summary

• ID
  rs27277860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144370534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT GTACTTATTC CCATTGACAA
  Y
  ATTGAGCTTT TTAGCTTGAC TATCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37481199	NES08947961	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C		C	C	C	C		T
ss320536512	CHEV_2_144354350	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27277860					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481199	NES08947961	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144370534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	503 bp distal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	1200 bp upstream
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	within coordinates
Rr566472	regulatory region 566472	1227 bp distal
Rr566473	regulatory region 566473	856 bp distal
Rr566474	regulatory region 566474	224 bp distal
Tssr20540	transcription start site region 20540	1087 bp downstream
Tssr20541	transcription start site region 20541	841 bp downstream
Tssr20542	transcription start site region 20542	812 bp downstream
Tssr26607	transcription start site region 26607	1190 bp upstream
Tssr26608	transcription start site region 26608	1182 bp upstream
Tssr26609	transcription start site region 26609	1164 bp upstream
Tssr26610	transcription start site region 26610	1102 bp upstream
Tssr26611	transcription start site region 26611	1077 bp upstream