rs27277864 SNP Detail

Summary

• ID
  rs27277864
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144370151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACGTTGTGG AACTGGGTTC TCCGGGATTC TATTAGAGCA
  CTTGGAACGT GACAGCAGCC AGGGCCAGAA GAGAGACCTG CATTTTCCCT GTAGTTCTTG
  K
  ACATGTGTTC GAATCCAGGA TTGCCCGGTT GCCAAGGGAA GTTCTATAAG AGAACGTTGG
  GGCCAAATGA GGGTTCAGTT TGTGATTACA AAGGACCAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37481203	NES08947957	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G		T	G	T	T	G	T	T	G
ss45326056	mCV22517819	ABI	CRAMUS_MOUSE	f	SNP		T	G					G
ss147798123	ENSMUSSNP5013791	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27277864					SNP	T	T	G	G	G	T	G	G	T	G	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37481203	NES08947957	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144370151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	120 bp distal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	817 bp upstream
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	within coordinates
Rr566472	regulatory region 566472	844 bp distal
Rr566473	regulatory region 566473	473 bp distal
Rr566474	regulatory region 566474	within coordinates
Tssr20540	transcription start site region 20540	704 bp downstream
Tssr20541	transcription start site region 20541	458 bp downstream
Tssr20542	transcription start site region 20542	429 bp downstream
Tssr26607	transcription start site region 26607	807 bp upstream
Tssr26608	transcription start site region 26608	799 bp upstream
Tssr26609	transcription start site region 26609	781 bp upstream
Tssr26610	transcription start site region 26610	719 bp upstream
Tssr26611	transcription start site region 26611	694 bp upstream